@inproceedings{pergola-etal-2021-boosting,
title = "Boosting Low-Resource Biomedical {QA} via Entity-Aware Masking Strategies",
author = "Pergola, Gabriele and
Kochkina, Elena and
Gui, Lin and
Liakata, Maria and
He, Yulan",
editor = "Merlo, Paola and
Tiedemann, Jorg and
Tsarfaty, Reut",
booktitle = "Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume",
month = apr,
year = "2021",
address = "Online",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2021.eacl-main.169",
doi = "10.18653/v1/2021.eacl-main.169",
pages = "1977--1985",
abstract = "Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently made available, those resources are still rather limited and expensive to produce; thus, transfer learning via pre-trained language models (LMs) has been shown as a promising approach to leverage existing general-purpose knowledge. However, fine-tuning these large models can be costly and time consuming and often yields limited benefits when adapting to specific themes of specialised domains, such as the COVID-19 literature. Therefore, to bootstrap further their domain adaptation, we propose a simple yet unexplored approach, which we call biomedical entity-aware masking (BEM) strategy, encouraging masked language models to learn entity-centric knowledge based on the pivotal entities characterizing the domain at hand, and employ those entities to drive the LM fine-tuning. The resulting strategy is a downstream process applicable to a wide variety of masked LMs, not requiring additional memory or components in the neural architectures. Experimental results show performance on par with the state-of-the-art models on several biomedical QA datasets.",
}
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<abstract>Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently made available, those resources are still rather limited and expensive to produce; thus, transfer learning via pre-trained language models (LMs) has been shown as a promising approach to leverage existing general-purpose knowledge. However, fine-tuning these large models can be costly and time consuming and often yields limited benefits when adapting to specific themes of specialised domains, such as the COVID-19 literature. Therefore, to bootstrap further their domain adaptation, we propose a simple yet unexplored approach, which we call biomedical entity-aware masking (BEM) strategy, encouraging masked language models to learn entity-centric knowledge based on the pivotal entities characterizing the domain at hand, and employ those entities to drive the LM fine-tuning. The resulting strategy is a downstream process applicable to a wide variety of masked LMs, not requiring additional memory or components in the neural architectures. Experimental results show performance on par with the state-of-the-art models on several biomedical QA datasets.</abstract>
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%0 Conference Proceedings
%T Boosting Low-Resource Biomedical QA via Entity-Aware Masking Strategies
%A Pergola, Gabriele
%A Kochkina, Elena
%A Gui, Lin
%A Liakata, Maria
%A He, Yulan
%Y Merlo, Paola
%Y Tiedemann, Jorg
%Y Tsarfaty, Reut
%S Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume
%D 2021
%8 April
%I Association for Computational Linguistics
%C Online
%F pergola-etal-2021-boosting
%X Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently made available, those resources are still rather limited and expensive to produce; thus, transfer learning via pre-trained language models (LMs) has been shown as a promising approach to leverage existing general-purpose knowledge. However, fine-tuning these large models can be costly and time consuming and often yields limited benefits when adapting to specific themes of specialised domains, such as the COVID-19 literature. Therefore, to bootstrap further their domain adaptation, we propose a simple yet unexplored approach, which we call biomedical entity-aware masking (BEM) strategy, encouraging masked language models to learn entity-centric knowledge based on the pivotal entities characterizing the domain at hand, and employ those entities to drive the LM fine-tuning. The resulting strategy is a downstream process applicable to a wide variety of masked LMs, not requiring additional memory or components in the neural architectures. Experimental results show performance on par with the state-of-the-art models on several biomedical QA datasets.
%R 10.18653/v1/2021.eacl-main.169
%U https://aclanthology.org/2021.eacl-main.169
%U https://doi.org/10.18653/v1/2021.eacl-main.169
%P 1977-1985
Markdown (Informal)
[Boosting Low-Resource Biomedical QA via Entity-Aware Masking Strategies](https://aclanthology.org/2021.eacl-main.169) (Pergola et al., EACL 2021)
ACL