Minhao Jiang


2023

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ReactIE: Enhancing Chemical Reaction Extraction with Weak Supervision
Ming Zhong | Siru Ouyang | Minhao Jiang | Vivian Hu | Yizhu Jiao | Xuan Wang | Jiawei Han
Findings of the Association for Computational Linguistics: ACL 2023

Structured chemical reaction information plays a vital role for chemists engaged in laboratory work and advanced endeavors such as computer-aided drug design. Despite the importance of extracting structured reactions from scientific literature, data annotation for this purpose is cost-prohibitive due to the significant labor required from domain experts. Consequently, the scarcity of sufficient training data poses an obstacle to the progress of related models in this domain. In this paper, we propose ReactIE, which combines two weakly supervised approaches for pre-training. Our method utilizes frequent patterns within the text as linguistic cues to identify specific characteristics of chemical reactions. Additionally, we adopt synthetic data from patent records as distant supervision to incorporate domain knowledge into the model. Experiments demonstrate that ReactIE achieves substantial improvements and outperforms all existing baselines.

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PIEClass: Weakly-Supervised Text Classification with Prompting and Noise-Robust Iterative Ensemble Training
Yunyi Zhang | Minhao Jiang | Yu Meng | Yu Zhang | Jiawei Han
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing

Weakly-supervised text classification trains a classifier using the label name of each target class as the only supervision, which largely reduces human annotation efforts. Most existing methods first use the label names as static keyword-based features to generate pseudo labels, which are then used for final classifier training. While reasonable, such a commonly adopted framework suffers from two limitations: (1) keywords can have different meanings in different contexts and some text may not have any keyword, so keyword matching can induce noisy and inadequate pseudo labels; (2) the errors made in the pseudo label generation stage will directly propagate to the classifier training stage without a chance of being corrected. In this paper, we propose a new method, PIEClass, consisting of two modules: (1) a pseudo label acquisition module that uses zero-shot prompting of pre-trained language models (PLM) to get pseudo labels based on contextualized text understanding beyond static keyword matching, and (2) a noise-robust iterative ensemble training module that iteratively trains classifiers and updates pseudo labels by utilizing two PLM fine-tuning methods that regularize each other. Extensive experiments show that PIEClass achieves overall better performance than existing strong baselines on seven benchmark datasets and even achieves similar performance to fully-supervised classifiers on sentiment classification tasks.

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Reaction Miner: An Integrated System for Chemical Reaction Extraction from Textual Data
Ming Zhong | Siru Ouyang | Yizhu Jiao | Priyanka Kargupta | Leo Luo | Yanzhen Shen | Bobby Zhou | Xianrui Zhong | Xuan Liu | Hongxiang Li | Jinfeng Xiao | Minhao Jiang | Vivian Hu | Xuan Wang | Heng Ji | Martin Burke | Huimin Zhao | Jiawei Han
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: System Demonstrations

Chemical reactions, as a core entity in the realm of chemistry, hold crucial implications in diverse areas ranging from hands-on laboratory research to advanced computational drug design. Despite a burgeoning interest in employing NLP techniques to extract these reactions, aligning this task with the real-world requirements of chemistry practitioners remains an ongoing challenge. In this paper, we present Reaction Miner, a system specifically designed to interact with raw scientific literature, delivering precise and more informative chemical reactions. Going beyond mere extraction, Reaction Miner integrates a holistic workflow: it accepts PDF files as input, bypassing the need for pre-processing and bolstering user accessibility. Subsequently, a text segmentation module ensures that the refined text encapsulates complete chemical reactions, augmenting the accuracy of extraction. Moreover, Reaction Miner broadens the scope of existing pre-defined reaction roles, including vital attributes previously neglected, thereby offering a more comprehensive depiction of chemical reactions. Evaluations conducted by chemistry domain users highlight the efficacy of each module in our system, demonstrating Reaction Miner as a powerful tool in this field.