The growing volume of scientific literature in polymer science presents a significant challenge for researchers attempting to extract and annotate domain-specific entities, such as polymer names, material properties, and related information. Manual annotation of these documents is both time-consuming and prone to error due to the complexity of scientific language. To address this, we introduce PolyMinder, an automated support system designed to assist polymer scientists in extracting and annotating polymer-related entities and their relationships from scientific documents. The system utilizes recent advanced Named Entity Recognition (NER) and Relation Extraction (RE) models tailored to the polymer domain. PolyMinder streamlines the annotation process by providing a web-based interface where users can visualize, verify, and refine the extracted information before finalizing the annotations. The system’s source code is made publicly available to facilitate further research and development in this field. Our system can be accessed through the following URL: https://www.jaist.ac.jp/is/labs/nguyen-lab/systems/polyminder
Polymers are widely used in diverse fields, and the demand for efficient methods to extract and organize information about them is increasing. An automated approach that utilizes machine learning can accurately extract relevant information from scientific papers, providing a promising solution for automating information extraction using annotated training data. In this paper, we introduce a polymer-relevant ontology featuring crucial entities and relations to enhance information extraction in the polymer science field. Our ontology is customizable to adapt to specific research needs. We present PolyNERE, a high-quality named entity recognition (NER) and relation extraction (RE) corpus comprising 750 polymer abstracts annotated using our ontology. Distinctive features of PolyNERE include multiple entity types, relation categories, support for various NER settings, and the ability to assert entities and relations at different levels. PolyNERE also facilitates reasoning in the RE task through supporting evidence. While our experiments with recent advanced methods achieved promising results, challenges persist in adapting NER and RE from abstracts to full-text paragraphs. This emphasizes the need for robust information extraction systems in the polymer domain, making our corpus a valuable benchmark for future developments.
Recently, relation classification has gained much success by exploiting deep neural networks. In this paper, we propose a new model effectively combining Segment-level Attention-based Convolutional Neural Networks (SACNNs) and Dependency-based Recurrent Neural Networks (DepRNNs). While SACNNs allow the model to selectively focus on the important information segment from the raw sequence, DepRNNs help to handle the long-distance relations from the shortest dependency path of relation entities. Experiments on the SemEval-2010 Task 8 dataset show that our model is comparable to the state-of-the-art without using any external lexical features.
This paper addresses the tasks of automatic seed selection for bootstrapping relation extraction, and noise reduction for distantly supervised relation extraction. We first point out that these tasks are related. Then, inspired by ranking relation instances and patterns computed by the HITS algorithm, and selecting cluster centroids using the K-means, LSA, or NMF method, we propose methods for selecting the initial seeds from an existing resource, or reducing the level of noise in the distantly labeled data. Experiments show that our proposed methods achieve a better performance than the baseline systems in both tasks.